[Biococoa-dev] BCPairwiseAlignment & BCScoreMatrix

Philipp Seibel philipp.seibel at byteworxx.de
Sat Mar 12 07:05:54 EST 2005


>
> On Mar 12, 2005, at 2:51 AM, Alexander Griekspoor wrote:
>
>>  First, indeed their maybe a benefit if we implement a general 
>> algorithm class BCAlignmentAlgorithm or something and have subclasses 
>> that implement the different alignments (NW, Smith-W).
>
> Not sure if I like the name BCAlignmentAlgorithm, it screams for 
> typo's ;)  We could have the result named BCAlignmentResult or 
> BCSequenceAlignment.
>
I agree with you. I like the BCSequenceAlignment version.

> - Koen.
>
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