[Biococoa-dev] Even more on sequence formats
Alexander Griekspoor
mek at mekentosj.com
Tue Apr 11 09:49:01 EDT 2006
hmm, who is poor now huh, after Koen sends his men in black and I
can't forward them to you because I'm a poor reader of your
website... ;-(
Cheers ;-)
Alex
On 11-apr-2006, at 15:45, Peter Schols wrote:
>>> - I've added support for reading sequence files that weren't
>>> saved as plain-text but as rtf, basically adding a check and
>>> converting the file to plain text before continuing with the
>>> normal format determination
>>
>> That would be great addition.
>
> Agreed!!!
>
>
>> BCSequenceReader now works very different from the way BCReader
>> does. I am not using a matrixDictionary anymore (see my comments
>> in the previous mail, and the actual code). The current
>> BCSequenceReader already reads a raw file in as one whole.
>>
>> BTW, be careful with what you put in your README for EnzymeX. I
>> noticed you wrote that it supports BEAST and TNT formats, but I
>> don't see those in BCReader. Unless you have a local version that
>> does, of course ;-) I'll have a look at the readseq code later.
>
> Maybe Alex got confused when reading our website: the BioCocoa site
> mentions these formats indeed, but keep in mind that this
> description still only applies to the GNUStep compatible version I
> created for a paper (which has become the 1.6). Please also note
> that the support for the Beast format is write-only (no reading) as
> is also mentioned on the BioCocoa website.
>
> Conclusion: I'm in no way liable for any financial claims from
> Mekentosj or their respective customers, I'm just a poor
> developer ;-)))
> (and getting poorer...)
>
> Disclaimer: http://www.kuleuven.be/cwis/email_disclaimer.htm
>
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>
*********************************************************
** Alexander Griekspoor **
*********************************************************
The Netherlands Cancer Institute
Department of Tumorbiology (H4)
Plesmanlaan 121, 1066 CX, Amsterdam
Tel: + 31 20 - 512 2023
Fax: + 31 20 - 512 2029
AIM: mekentosj at mac.com
E-mail: a.griekspoor at nki.nl
Web: http://www.mekentosj.com
The requirements said: Windows 2000 or better.
So I got a Macintosh.
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