[Biococoa-dev] translation bug

Koen van der Drift kvddrift at earthlink.net
Sun Apr 23 16:10:03 EDT 2006


When running the Translation demo, every DNA sequence that is entered  
only returns one amino acid for the translated protein. So I have  
been trying to find out why this happens. I have narrowed it down to  
BCSequenceCodon's longestOpenReadingFrame: method, which will always  
return a holdingRange with a length of one, possibly because  
openReadingFramesLongerThanCutoff: returns a wrong value. My  
knowledge of this particular part of the code is limited, so if  
anyone feels to jump in and have a look if they see what is going on,  
please go ahead ;-)


- Koen.

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