[Biococoa-dev] read Fasta File with gap symbols

[Koen van der Drift]

On Apr 1, 2009, at 8:43 PM, Scott Christley wrote:

> Yes, it doesn't seem reasonable to filter file-based sequences.   
> It's a bit unclear to me why blindly removing symbols is considered  
> acceptable behavior in the first place.

I suspect that's a 'work in progress' leftover :)   One possible  
solution could also be to use a symbolset that takes into account gaps.

- Koen.