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--></style><title>Re: [Biococoa-dev] Should we
choose?</title></head><body>
<blockquote type="cite" cite>On Jan 12, 2005, at 1:41 AM, Charles
PARNOT wrote:</blockquote>
<blockquote type="cite" cite><br>
<blockquote type="cite" cite>Wow, it looks like we get a nice
unanimous agreement! I guess I will have to write the (very little)
code needed for BCSequenceGeneric, now that I bragged so much about
it. BTW, is the naming OK? I was tempted to propose simply BCSequence
for the generic subclass, but I think in the end, BCSequenceGeneric
(or something equivalent) could carry more sense and be clearer for
everybody, particularly if living with other subclasses. And keeping
the superclass name to BCSequence is also more consistent with the
class hierarchy. OK, I know, I am just arguing with myself,
here.</blockquote>
</blockquote>
<blockquote type="cite" cite><br></blockquote>
<blockquote type="cite" cite>Actually, I would prefer the name
BCSequence for what the user will use, which is BCSequenceGeneric in
your proposal, right? We can then rename BCSequence to something like
BCAbstractSequence, or even promote the current BCSymbolList to that
role.</blockquote>
<div><br></div>
<div>I don't really have an preference on this (I have contradictory
thoughts that cancel each other), so I will let you guys decide.</div>
<div><br></div>
<div><br></div>
<blockquote type="cite" cite><br>
<blockquote type="cite" cite><br></blockquote>
<blockquote type="cite" cite>Next issues are:</blockquote>
<blockquote type="cite" cite>* annotations (a new ivar in the
superclass, and a category of the superclass for the
implementation??)</blockquote>
</blockquote>
<blockquote type="cite" cite><br></blockquote>
<blockquote type="cite" cite>IIRC, I think we already agreed to make a
BCAnnotation class, and put an ivar to it in the
superclass.</blockquote>
<blockquote type="cite" cite><br></blockquote>
<div><br></div>
<div>OK, I was not sure, hence the question marks.</div>
<div>I am complete newbie in the whole annotation discussion anyway,
so I will just try to catch up as it goes...</div>
<div><br></div>
<div>Charles</div>
<div><br></div>
<div><br></div>
<div><tt><br></tt></div>
<div>Charles Parnot</div>
<div>charles.parnot@stanford.edu</div>
<div><br></div>
<div>Help science go fast forward:</div>
<div>http://cmgm.stanford.edu/~cparnot/xgrid-stanford/</div>
<div><br></div>
<div>Room B157 in Beckman Center</div>
<div>279, Campus Drive</div>
<div>Stanford University</div>
<div>Stanford, CA 94305 (USA)</div>
<div><br></div>
<div>Tel +1 650 725 7754</div>
<div>Fax +1 650 725 8021</div>
<div><br></div>
<div><br></div>
<x-sigsep><pre>--
</pre></x-sigsep>
<div>Charles Parnot<br>
charles.parnot@stanford.edu<br>
<br>
Help science go fast forward:<br>
http://cmgm.stanford.edu/~cparnot/xgrid-stanford/<br>
<br>
Room B157 in Beckman Center<br>
279, Campus Drive<br>
Stanford University<br>
Stanford, CA 94305 (USA)<br>
<br>
Tel +1 650 725 7754<br>
Fax +1 650 725 8021</div>
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