<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">Hello Davide,<DIV><BR class="khtml-block-placeholder"></DIV><DIV>If you send me a patch with your changes, I can apply it to the repository. You would need to be given developer access in order to commit the changes yourself.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>As for testing, there is a target in the Xcode project called "Test - BCFoundation" which tests some of the classes, it is not a comprehensive test suite but it does check a number of things. If you build that target, it automatically runs the tests; you can see the output of the tests in the Build Results windows, specifically the Build Transcripts view in the middle section. I don't believe there are any BCSequenceReader tests yet, maybe you would like to donate the first one with a simple test for the macvector format?</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>cheers</DIV><DIV>Scott</DIV><DIV><BR><DIV><DIV>On Sep 11, 2007, at 10:17 AM, Davide Cittaro wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"> Hi there, after some time I've decided to open biococoa framework and try my very first cocoa coding experience.<DIV>I've added a method to BCSequeceReader so that one can read sequences from macvector. I would like to commit my changes but biococoa website (and bioinformatics.org after all) is not available at this time.</DIV><DIV>Also I would like to test annotation parsing capabilities, but the demo provided (translation and peptides) only manage sequences... Is there software built on BioCocoa I can use to test the framework extensively?</DIV><DIV><BR class="webkit-block-placeholder"></DIV><DIV>Thanks</DIV><DIV><BR class="webkit-block-placeholder"></DIV><DIV>d</DIV><DIV><BR><DIV> <SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">/*</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Davide Cittaro</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">HPC and Bioinformatics Systems @ Informatics Core</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; "><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">IFOM - Istituto FIRC di Oncologia Molecolare</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">via adamello, 16</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">20139 Milano</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Italy</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; "><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">tel.: +39(02)574303007</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">e-mail:<SPAN class="Apple-converted-space"> </SPAN><A href="mailto:davide.cittaro@ifom-ieo-campus.it"><FONT class="Apple-style-span" color="#0011ED"><SPAN class="Apple-style-span" style="color: rgb(0, 17, 237); -khtml-text-decorations-in-effect: underline; "><SPAN class="Apple-style-span" style="color: rgb(0, 17, 237); -khtml-text-decorations-in-effect: underline; ">davide.cittaro@ifom-ieo-campus.it</SPAN></SPAN></FONT></A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">*/</DIV><BR class="Apple-interchange-newline"></SPAN></SPAN> </DIV><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Biococoa-dev mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:Biococoa-dev@bioinformatics.org">Biococoa-dev@bioinformatics.org</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="https://bioinformatics.org/mailman/listinfo/biococoa-dev">https://bioinformatics.org/mailman/listinfo/biococoa-dev</A></DIV> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>