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Hi Scott<div><br><div><div>On Sep 11, 2007, at 9:12 PM, Scott Christley wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hello Davide,<div><br class="khtml-block-placeholder"></div><div>If you send me a patch with your changes, I can apply it to the repository. You would need to be given developer access in order to commit the changes yourself.</div><div></div></blockquote></div><div><br class="webkit-block-placeholder"></div>After a long reading, I've decided to send the patch.</div><div>It is not clear which version I had to patch... I've checked BCSequenceIO files and they don't look different in various 2.x versions (-> .dmg, trunk, branch 2.0 and release-2.0), BTW I've done the patch against the downloadable .dmg version. </div><div>Essentially the changes are:</div><div>in BCSequenceReader.h:</div><div>MACVECTOR_HEADER struct definition (to get MV file info)</div><div>(BCSequenceArray *)readMacVectorFile:(NSString *)textFile method definition</div><div><br class="webkit-block-placeholder"></div><div><div>in BCSequenceReader.m:</div><div>NSHFSTypeOfFile "scanning" to allow reading of 'NUCL' or 'PROT' files (in the same manner you do for GCK files).</div>(BCSequenceArray *)readMacVectorFile:(NSString *)textFile method implementation</div><div><br></div><div>d<br><div> <span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">/*</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Davide Cittaro</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">HPC and Bioinformatics Systems @ Informatics Core</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; "><br></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">IFOM - Istituto FIRC di Oncologia Molecolare</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">via adamello, 16</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">20139 Milano</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Italy</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; "><br></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">tel.: +39(02)574303007</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">e-mail:<span class="Apple-converted-space"> </span><a href="mailto:davide.cittaro@ifom-ieo-campus.it"><font class="Apple-style-span" color="#0011ED"><span class="Apple-style-span" style="color: rgb(0, 17, 237); -khtml-text-decorations-in-effect: underline; "><span class="Apple-style-span" style="color: rgb(0, 17, 237); -khtml-text-decorations-in-effect: underline; ">davide.cittaro@ifom-ieo-campus.it</span></span></font></a></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">*/</div></span></span></div></div></body></html>