[Biodevelopers] request for help on bioinformatics problem

[bioinfo]

Andrew,
	How long are the read windows that you are looking for?  You
might be able to use blast without the gaping functions and set a window
size to the length of homologous bases your looking for.  Just a
thought.

Mark

-----Original Message-----
From: biodevelopers-admin at bioinformatics.org
[mailto:biodevelopers-admin at bioinformatics.org] On Behalf Of Andrew
Bagshaw
Sent: Saturday, September 07, 2002 1:28 AM
To: biodevelopers at bioinformatics.org
Subject: [Biodevelopers] request for help on bioinformatics problem


Hello,

I am trying to find homologous pairs from among thousands of 50 bp
sequences as part of my bioinformatics research. Could someone please
advise if there is any software available anywhere that will do this
job?

Andrew Bagshaw
Doctoral student in genetics
University of Canterbury
New Zealand
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