[Biodevelopers] Urgent Help

Gavai, Anand Anand.Gavai at wur.nl
Wed Feb 5 10:03:29 EST 2003


Hi Everybody,
I am trying to install the bioperl-ext module from cvs.bioperl.org site because I want to integrate the Staden package with our bioSQL database, now as per the README file I tried to install all the extension packages but was unable to do that, so I chose to install the individual packages
by following the steps which were mentioned
i.e. 
cd Bio/Ext/Align
perl Makefile.PL
make
make test
make install

this was installed successfully but then I selected to install the SeqIO for the staden package and as mentioned in the README file it asked for
/usr/local/lib and usr/local/include/io_lib
(Note: I have already installed the io_lib package from ftp://ftp.mrc-lmb.cam.ac.uk/pub/staden/io_lib)
I was able to find the Read.h file in io_lib/read directory but I could not find the "libread" library which is mentioned in the README file, I even tried to give the path of the Staden package lib directory but its still not able to install it. Where is that "libread" file located. 

Any other options or opinions are most welcome.

Thanks in Advance,

Anand Gavai
MSc Bioinformatics
Wageningen University
Wageningen,
The Netherlands.











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