[Biodevelopers] Re:[Help] Genbank flat file

[Pierre LINDENBAUM]

> Date: Thu, 5 Jun 2003 04:09:30 +0900
> From: thlee at bio.myongji.ac.kr
> To: biodevelopers at bioinformatics.org
> Subject: [Biodevelopers] [Help] Genbank flat file
> parsing C library
> Reply-To: biodevelopers at bioinformatics.org
> 
> Hi¡¦
> I have been used biopython for genbank flat file
> parsing.
> It is work well, but too slows in large file such as
> Arabidopsis chromosome sequences.
> Thus, I decide to use c library for parsing. But, I
> don't know what library is there.
> Please, teach me libraries or c codes for Genbank
> flat file parsing.

Hello,
Genbank sequences are now available from NCBI as an
XML format. So I guess it should be easy to parse it
using a standard C xml library such as libxml (see
http://xmlsoft.org/)

hope it helps

Pierre Lindenbaum



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