[Biodevelopers] Tree/hierarchical clustering software?

Iddo Friedberg idoerg at burnham.org
Mon Nov 17 13:30:50 EST 2003


I have data in the form of a distance matrix (well, similarity, but 
easily convertible). I would like a hierarchical clustering software which:

1) Has a good number of amalgamation rules. I want to throw as many 
things as I can at my data set. A good number of distance rules 
(Eucledian, squared, Chebychev etc.) would be nice too.

2) A nice tree display. Failing that, an output in one of the standard 
formats which I can display using TreeView, or somesuch.

I know I can use Neighbor from Phylip, I just wondered what else is out 
there. Any reply would be helpful.



Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 646 3171

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