On Mon, 2004-02-23 at 07:36, Stefanie Lager wrote: > Thank you, > > I really don't know much about compilation of c programs, so I don't > know what "-D__unix" means, and how it should be added? Ok, edit the "Makefile" and make the CFLAGS line look like this: CFLAGS= -g -O2 -Wall -Wshadow -D__unix Then from the command prompt rm -f *.o make You will get lots of warnings, but it should work. Joe > > Stefanie > > > Did you add a > > > > -D__unix > > > > to the compile line? > > > > [landman at protein.scalableinformatics.com:~/seqio-1.2.2] > > 120 >./fmtseq > > > > Input: *none* (format: *auto*) > > Output: *stdout* (format: *none*) > > Deflts: -verbose -gapin=- -gapout=- -bigalign > > Options: -all > > > > Warning: An input file and output format must be specified. > > > > Commands (-option - set option, -no... - unset option, ? -help - list > > options, > > -r -run - execute, -q -quit - exit program, other - set input > > file) > > Enter: > > > > I can package up this directory and build an RPM out of it if there is > > interest. > > > > Joe > > > > On Mon, 2004-02-23 at 04:47, Stefanie Lager wrote: > >> Hi, > >> > >> I have problems to compile the Seqio library and specifically the > >> fmtseq sequence format conversion program, on Linux. It seems as if > >> line 150 in seqio.c and line 40 in fmtseq.c (extern char > >> *sys_errlist[]) is in conflict with stdio.h (gcc version 3.2.2). I've > >> tried to comment out these two lines, and then it compiles, but when > >> I try to run fmtseq it crashes with "Segmentation fault". Does anyone > >> know how to modify seqio.c and fmtseq.c, so they can be compiled on > >> Linux? > >> > >> Stefanie > >> _________________________________________________________________ > >> http://fastmail.ca/ - Fast Secure Web Email for Canadians > >> _______________________________________________ > >> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > >> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > > -- > > Joe Landman <landman at scalableinformatics.com> > > > > _______________________________________________ > > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > _________________________________________________________________ > http://fastmail.ca/ - Fast Secure Web Email for Canadians > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board