[Biodevelopers] Mapping between various protein indices

Dan Bolser dmb at mrc-dunn.cam.ac.uk
Fri May 28 11:36:50 EDT 2004

sure thing!

It looks like SeqHound precomputes binary alignments between refseq if you
want to try doing a lookup.

Else it should be quite quick to blast all nr sequenecs agains each other.

Let me know,

On Fri, 28 May 2004, Michael Maibaum wrote:

>I'm currently working on a project (BioMap) that will integrate GO, 
>KEGG, genomic sequences (peptides) and UniProt and provide a 
>similarity/protein family based mapping between the various 
>identifiers/sequences in the different repositories. It isn't ready yet 
>though (if anyone wants to donate cluster time so I can get the mapping 
>done faster ;) )
>Biodevelopers mailing list
>Biodevelopers at bioinformatics.org

More information about the Biodevelopers mailing list