sure thing! It looks like SeqHound precomputes binary alignments between refseq if you want to try doing a lookup. Else it should be quite quick to blast all nr sequenecs agains each other. Let me know, Dan. On Fri, 28 May 2004, Michael Maibaum wrote: >FWIW, > >I'm currently working on a project (BioMap) that will integrate GO, >KEGG, genomic sequences (peptides) and UniProt and provide a >similarity/protein family based mapping between the various >identifiers/sequences in the different repositories. It isn't ready yet >though (if anyone wants to donate cluster time so I can get the mapping >done faster ;) ) > >cheers > >Michael > >_______________________________________________ >Biodevelopers mailing list >Biodevelopers at bioinformatics.org >https://bioinformatics.org/mailman/listinfo/biodevelopers >