[Biodevelopers] The new COG database

Swati Pande pandeswati at gmail.com
Thu Nov 4 23:30:06 EST 2004

Has anyone worked with the new set of sequences in the COG database?
It seems that, unlike the old one, there is no direct way to download
sequences specific to a COG. On ftp, there is a file called whog which
contains information on each COG and a file called myva which is a
FASTA file containing all the proteins from the genomes in the new COG
db. In the old COG db, it was possible to download FASTA sequences for
each COG but I cant seem to find the same tool for the new set.
I can work around this, but I was just wondering if anyone knows of
anyway to do this faster?

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