Hi! I'd need a fast threading algorithm to fit a number of aligned sequences to a given structure, like the "fit" algorithm in the DeepView. Since the sequences are already aligned and are members of the same family (e.g. a pfam seed) a fit-like algorithm should be enough for my purposes. I need to generate new coordinates for further analysis with gromacs. Is it possible for you to send me a corresponding source code, or a reference to an article describing the algorithm or for instance a command line application for linux environment? Thanks! Hota