Dear All! I am now trying to parse a Blast output using PERL. I have to extract each alignment and have to parse the alignment. I mean, I have to check whether a particular part of the given sequence got aligned 100%. Anybody please tell me what module in PERL I have to use for getting this. I've tried Bio::SearchIO. But I didnt get any method to get the alignment. Kindly help. Thanks, R. Prabu -------------- next part -------------- An HTML attachment was scrubbed... URL: http://bioinformatics.org/pipermail/biodevelopers/attachments/20060720/49c5e01f/attachment.html