[Biodevelopers] Looking for repeat motifs - ideas?

J.W. Bizzaro jeff at bioinformatics.org
Wed Feb 27 16:49:28 EST 2008


Mike,

Using RegExes, how would you handle limited mismatches within the repeated motif, esp. when its position is unknown?

Jeff

Mike Marchywka wrote:
> 
> The regex people probably question my syntax but I'm using things like
> [\1]{10,20}.{10,20}[\2]{10,20}.{10,20}[\1]{10,20}[\2]{10,20}
> to find pseudo knots with distance of 10-20 between reverse-complement regions.

-- 
J.W. Bizzaro
Bioinformatics Organization, Inc. (Bioinformatics.Org)
E-mail: jeff at bioinformatics.org
Phone:  +1 508 890 8600
--



More information about the Biodevelopers mailing list