[Biodevelopers] parallel implementation of Needleman-Wunsch algorithm

[Martin Gollery]

Hi Sunitha,
I believe that the latest version of Fasta from Bill Pearson has a
Needleman-Wunsch option, and it is available with both MPI and PVM.

Best Regards,
Marty

On Wed, Jul 9, 2008 at 1:38 AM, K. Sunitha Manjari <sunithak at cdac.in> wrote:
> Hello,
>
> I am looking for the parallel implementation (either MPI or PVM) of
> Needleman-Wunsch algorithm for pairwise alignnment as well as for database
> searching. Is anyone aware of the availability of the source code for the
> same. If so please let me know the URL.
>
> Thanks for your time.
>
> regards
>
> Sunitha Manjari
> Bioinformatics Team
> Centre for Development of Advanced Computing
> Pune University Campus
> Pune -411007
> Maharashtra
> INDIA
>
>
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> Biodevelopers at bioinformatics.org
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>



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Martin Gollery
Senior Bioinformatics Scientist
TimeLogic- a Division of Active Motif
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