> To me this does suggest a natural place to delineate between GenePHP > and BioPHP - with GenePHP you appear to be moving towards almost a > pre-written > application for handling gene and protein sequences, while I've been > focussed > more on individual components that can be assembled in different ways > almost > completely independent of each other (I have also been planning to go > beyond > sequences at some point to include, e.g. phylogenetic trees > [indepedent of > sequences, i.e. pre-calculated "newick" format trees], potentially HPLC > Chromatograms and Mass Spectra, and so on). > This suggests to me then that BioPHP serve as a "component > repository", while > GenePHP remains the "implementation repository" where assembled > collections > of components and components that are incorporated directly into the > GenePHP > framework would go there. Someone who wants to build a "custom" > application or focussed "mini program" (i.e. for a public web page) > would > do so with BioPHP components. Someone looking for a "drop-in" > framework > for a sequence-handling application would instead just use GenePHP. > Does that make any sense?... > > I thought that Serge hoped to develop a bioinformatics library, not an application. Seems to be the same goal Sean had in mind with Biophp. I for one hope that the two of you can merge the projects sooner rather than later (also see my post concerning cvs), it would be a pity to dilute the efforts (and confuse outsiders) by splitting it in two. Best, Nico