[Biophp-dev] Re: New question from the Newbie

[biophp-dev@bioinformatics.org]

Hi Nico,

The line was the #166 of the file parsers/swissprot_inc.php that you =
talk
about on your 19 March e-mail.
So if $sourcelines is an array, I understand how that loops works but I =
don't
understand where is the step that put all my swissprot file (cause I use =
a
file) in this array. So if you could tell me the file and the line of =
this
step it would be great.

Thanks a lot.

Fred

-----Message d'origine-----
De : biophp-dev-admin@bioinformatics.org
[mailto:biophp-dev-admin@bioinformatics.org]De la part de Nico Stuurman
Envoy=E9 : lundi 22 mars 2004 17:03
=C0 : biophp-dev@bioinformatics.org
Objet : Re: [Biophp-dev] Re: New question from the Newbie


Hi Fred,

> Do you have an url where I can find updated version of these scripts =
in
order
> to start playing.

No, that looks like the right place (which still does not explain where
that line you quoted came from, maybe better to mention the filename and
line number?).

In general, however, it is better and easier (in the long run) to check
out the cvs repository.  The files you are using are maintained in a
source code control system called 'cvs'.  If you happen to have a UNIX
based OS, you are ready to use cvs.  There are tools for windows as
well, but the last reports (9 months ago) indicated they do not work
with the cvs at bioinformatics.org.  You can find instructions on how to
use cvs at:
http://sourceforge.net/docman/display_doc.php?docid=3D14033&group_id=3D1

On my box I can just type:

cvs -z3 -d:ext:nicost@bioinformatics.org:/cvsroot co biophp

and I will be prompted for my password (note that the environment
variable 'CVS_RSH' should be set to 'ssh').  You'll need an account at
bioinformatics.org for this to work (just request one using their
webinterface, anonymous checkout is also possible), and - to be able to
put your changes back into the repository - you will need write access
as well (which Sean can grant you).


Hope you are not overwhelmed.

Best,

Nico



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