inken@vidar:~/Software/CMView-1.1rc6$ ./cmview.sh 
Starting CMView 1.1rc6
Loading configuration file cmview.cfg
Using temporary directory /tmp
Connecting to PyMol...
Starting PyMol...
Connected.
Using DSSP executable /ufs/inken/Software/DaliLite_2.4.5/Bin/dssp
Loading from Pdb file
Filename:	/ufs/inken/Desktop/test1/pdb/1c52A.pdb
Model serial:	1
Chain code:	A
Contact type:	Ca
Dist. cutoff:	8.0
Min. Seq. Sep.:	none
Max. Seq. Sep.:	none
(Re)assigning secondary structure using DSSP
Contact map 1c52A.pdb loaded.
Loading from Pdb file
Filename:	/ufs/inken/Desktop/test1/pdb/1c52A.pdb
Model serial:	1
Chain code:	A
Contact type:	Ca
Dist. cutoff:	8.0
Min. Seq. Sep.:	none
Max. Seq. Sep.:	none
(Re)assigning secondary structure using DSSP
Exception occurred during event dispatching:
java.lang.IllegalStateException: No match found
	at java.util.regex.Matcher.group(Matcher.java:485)
	at owl.core.runners.DaliRunner.correctFileDALIFormat(DaliRunner.java:96)
	at owl.core.runners.DaliRunner.<init>(DaliRunner.java:65)
	at cmview.View.doDALIAlignment(View.java:2128)
	at cmview.View.handlePairwiseAlignment(View.java:1961)
	at cmview.View.doLoadFromPdbFile(View.java:1604)
	at cmview.View$8.doit(View.java:1542)
	at cmview.LoadDialog.go(LoadDialog.java:893)
	at cmview.LoadDialog.actionPerformed(LoadDialog.java:573)
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012)
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335)
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404)
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
	at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:253)
	at java.awt.Component.processMouseEvent(Component.java:6203)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:5968)
	at java.awt.Container.processEvent(Container.java:2105)
	at java.awt.Component.dispatchEventImpl(Component.java:4564)
	at java.awt.Container.dispatchEventImpl(Container.java:2163)
	at java.awt.Component.dispatchEvent(Component.java:4390)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4461)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4125)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055)
	at java.awt.Container.dispatchEventImpl(Container.java:2149)
	at java.awt.Window.dispatchEventImpl(Window.java:2478)
	at java.awt.Component.dispatchEvent(Component.java:4390)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
	at java.awt.EventQueue.access$000(EventQueue.java:96)
	at java.awt.EventQueue$1.run(EventQueue.java:608)
	at java.awt.EventQueue$1.run(EventQueue.java:606)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
	at java.awt.EventQueue$2.run(EventQueue.java:622)
	at java.awt.EventQueue$2.run(EventQueue.java:620)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:194)
	at java.awt.Dialog$1.run(Dialog.java:1072)
	at java.awt.Dialog$3.run(Dialog.java:1126)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.awt.Dialog.show(Dialog.java:1124)
	at java.awt.Component.show(Component.java:1496)
	at java.awt.Component.setVisible(Component.java:1448)
	at java.awt.Window.setVisible(Window.java:842)
	at java.awt.Dialog.setVisible(Dialog.java:1011)
	at cmview.LoadDialog.showIt(LoadDialog.java:405)
	at cmview.View.handleLoadFromPdbFile(View.java:1574)
	at cmview.View.actionPerformed(View.java:1327)
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012)
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335)
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404)
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
	at javax.swing.AbstractButton.doClick(AbstractButton.java:374)
	at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:829)
	at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:873)
	at java.awt.Component.processMouseEvent(Component.java:6203)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:5968)
	at java.awt.Container.processEvent(Container.java:2105)
	at java.awt.Component.dispatchEventImpl(Component.java:4564)
	at java.awt.Container.dispatchEventImpl(Container.java:2163)
	at java.awt.Component.dispatchEvent(Component.java:4390)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4461)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4125)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055)
	at java.awt.Container.dispatchEventImpl(Container.java:2149)
	at java.awt.Component.dispatchEvent(Component.java:4390)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
	at java.awt.EventQueue.access$000(EventQueue.java:96)
	at java.awt.EventQueue$1.run(EventQueue.java:608)
	at java.awt.EventQueue$1.run(EventQueue.java:606)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
	at java.awt.EventQueue$2.run(EventQueue.java:622)
	at java.awt.EventQueue$2.run(EventQueue.java:620)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)