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Actually I've just realised that this could be a problem of
thunderbird only. It happened when I use "reply to list" but not
when I use "reply all". It doesn't seem to happen with gmail either.
Maybe I should finally drop thunderbird once and for all ;)<br>
<br>
Jose<br>
<br>
<br>
On 11/04/2011 09:45 AM, Jose Duarte wrote:
<blockquote cite="mid:4EB3A62F.9090700@psi.ch" type="cite">
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Sending this to the list again as it didn't reach it. I simply hit
on "reply all" but it seems that the "reply-to" field contains the
address <a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:cmview-devel@www.bioinformatics.org">cmview-devel@www.bioinformatics.org</a>.
The prefixing "www" makes it fail.<br>
<br>
Should we tell Jeff? Is this happening for you too guys? What
happens when you "reply-all" or "reply to list"?<br>
<br>
Jose<br>
<br>
<br>
<br>
-------- Original Message --------
<table class="moz-email-headers-table" border="0" cellpadding="0"
cellspacing="0">
<tbody>
<tr>
<th nowrap="nowrap" valign="BASELINE" align="RIGHT">Subject:
</th>
<td>Re: [cmview-devel] Fwd: Bug report - PyMol frequently
crashing when used by CMView</td>
</tr>
<tr>
<th nowrap="nowrap" valign="BASELINE" align="RIGHT">Date: </th>
<td>Fri, 04 Nov 2011 09:41:29 +0100</td>
</tr>
<tr>
<th nowrap="nowrap" valign="BASELINE" align="RIGHT">From: </th>
<td>Jose Duarte <a moz-do-not-send="true"
class="moz-txt-link-rfc2396E"
href="mailto:jose.duarte@psi.ch"><jose.duarte@psi.ch></a></td>
</tr>
<tr>
<th nowrap="nowrap" valign="BASELINE" align="RIGHT">To: </th>
<td><a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:cmview-devel@www.bioinformatics.org">cmview-devel@www.bioinformatics.org</a>,
<a moz-do-not-send="true" class="moz-txt-link-abbreviated"
href="mailto:thomas.hopf@gmail.com">thomas.hopf@gmail.com</a></td>
</tr>
<tr>
<th nowrap="nowrap" valign="BASELINE" align="RIGHT">CC: </th>
<td><a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:deboramarks@gmail.com">deboramarks@gmail.com</a></td>
</tr>
</tbody>
</table>
<br>
<br>
<pre>Hi Thomas and all
Thanks a lot for the bug report and sorry for the late reply.
You mention that you attached the console output and log from MacOS.
Unfortunately that didn't reach here after the long chain of emails...
Could you send that again (copying the <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:cmview-devel@bioinformatics.org">cmview-devel@bioinformatics.org</a>
list)? Also it would be helpful to know if you have tried in other OS
apart from MacOS, can you reproduce the error in Windows or Linux?
Cheers
Jose
On 11/04/2011 09:21 AM, Henning Stehr wrote:
> Hi all,
>
> I am forwarding a message from Michael with a bug report by an
> otherwise happy user of CMView.
>
> Cheers,
> Henning
>
>
> Begin forwarded message:
>
> Dear all -
>
> finally I am getting near the bottom of the pile -
> sorry for not forwarding / responding earlier (mea culpa)
>
> I couldn't reproduce the error Thomas mailed me -
> but I am running cmview 1.1.rc6 with pymol 1.2r2
> so is the new pymol the cuplprit?
>
> A wild guess would be that the feature of highlighting the
> current contact in the 3D view creates a memory problem/leak in pymol ...
> just don't know if there's a simple switch in cmview-config file to
> turn that off.
>
> hope that helps with bugtracking, cheers .\\ichael
>
> Begin forwarded message:
>
> From: Thomas Hopf<a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:thomas.hopf@gmail.com"><thomas.hopf@gmail.com></a>
>
> Date: September 26, 2011 6:52:28 PM GMT+02:00
>
> To: Michael Lappe<a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:drmlappe@googlemail.com"><drmlappe@googlemail.com></a>
>
> Cc: <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:deboramarks@gmail.com">deboramarks@gmail.com</a>
>
> Subject: CMView/MacPyMOL crashes
>
> Dear Dr Lappe,
>
> thanks for providing the CMView software, it is really good and
> useful. However, I have some trouble using it because it crashes
> frequently.
>
> The crash occurs 100% reproducibly after some time (few minutes), in
> which I do nothing else but selecting some of the contacts in CMView
> and rotating the protein in MacPymol. At some point, MacPymol crashes
> and the CMView process has to be killed because it puts the CPU under
> heavy load. I attached both the console output by CMView 1.1.1 and the
> log given by MacOS 10.6.8 upon MacPymol 1.3 crashing.
>
> Hope this helps in identifying the problem.
>
> Best wishes,
>
> Thomas Hopf
>
> Am 26.09.11 11:38, schrieb Debora Marks:
>
> Micheal
>
> Hi there !!
>
> You may want to re-login to the web page I gave you a while back to
> see the updated paper and supplement. Its really changed so I
> recommend it
>
> In the meanwhile, Thomas, a student of mine, is having some 'crashing
> ' issues with CMView ( which is GREAT) and will drop you a line about
> it
>
> Debbie
> _______________________________________________
> cmview-devel mailing list
> <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:cmview-devel@www.bioinformatics.org">cmview-devel@www.bioinformatics.org</a>
> <a moz-do-not-send="true" class="moz-txt-link-freetext" href="http://www.bioinformatics.org/mailman/listinfo/cmview-devel">http://www.bioinformatics.org/mailman/listinfo/cmview-devel</a>
</pre>
</blockquote>
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