<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:14pt">Hi there,<br><br>I have been struggling with running cmview now for awhile, I am very happy to findout about this group and ask my question here. <br><br>I have changed my generated pdb file format, already for several times and it is still giving a weird sort of graph and loosing some info probably. This is the error I get and the result image is attached. Please let me know if you need more info. Thanks in advance!<br><br><div style="margin-left: 40px;">Maryam% cmview.sh<br>Starting CMView 1.1.1<br>Loading configuration file cmview.cfg<br>Using temporary directory /var/folders/JN/JNvt1vfbH4CRpqOfuMtdQk+++TI/-Tmp-/<br>Connecting to PyMol...<br>Starting PyMol...<br>Connected.<br>Using DSSP executable ../dssp-2.1.0/src<br>Loading from Pdb file<br>Filename: /Users/Maryam/Desktop/10ns-3.pdb<br>Model
serial: 1<br>Chain code: NULL<br>Contact type: Ca<br>Dist. cutoff: 8.0<br>Min. Seq. Sep.: none<br>Max. Seq. Sep.: none<br>(Re)assigning secondary structure using DSSP<br>Failed to assign secondary structure: Cannot run program "../dssp-2.1.0/src": error=13, Permission denied<br>Warning: 89 unobserved or non-standard residues<br>Warning: Chain NULL is now called A<br>Contact map 2kunA loaded.<br><br></div><div><br></div></div></body></html>