<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:14pt"><br><div style="font-family: times new roman, new york, times, serif; font-size: 14pt;"><div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"><div class="y_msg_container"><div id="yiv4733551886"><div><div style="color:#000;background-color:#fff;font-family:times new roman, new york, times, serif;font-size:14pt;"><div><br>Hi there,</div><div style="color:rgb(0, 0, 0);font-size:18.6667px;font-family:times new roman, new york, times, serif;background-color:transparent;font-style:normal;"><br></div><div style="color:rgb(0, 0, 0);font-size:18.6667px;font-family:times new roman, new york, times, serif;background-color:transparent;font-style:normal;">In the tutorial after it loads the pdb it gets a triangle display while I
get a square display. As it is mentioned in the manual, this is an
experimental feature (?). So, I should add this line to the config file:
<i><code>USE_EXPERIMENTAL_FEATURES =
true<br></code></i>I added the line right after the directories like this:<br>#Properties file for CMView 1.1<br><br>PYMOL_EXECUTABLE=../MacPyMOL.app/Contents/MacOS/MacPyMOL<br>DSSP_EXECUTABLE=../dssp-2.1.0/dssp<br>DALI_EXECUTABLE=/usr/bin/DaliLite<br>DEFAULT_DISTANCE_CUTOFF=8.0<br>DEFAULT_CONTACT_TYPE=Ca<br>USE_EXPERIMENTAL-FEATURES = TRUE<br><br>and this error appeared:</div><div style="color:rgb(0, 0, 0);font-size:18.6667px;font-family:monospace;background-color:transparent;font-style:italic;"><br>Connecting to database...<br>Warning: MySQL connection file /Users/Maryam/.my.cnf doesn't exist. Will use default parameters for connection<br>No database found. Some functionality will not be available.<br><br><span style="font-family:arial, helvetica, sans-serif;"><span><font size="3"><span><span>I
guess this means a lot of work should be done, but I am not aware of
the steps I should take to make this work. Is this related to having triangle instead of square display.</span></span><br><br>Thanks in advance,<br>Maryam<br></font></span></span><br></div></div></div></div><br><br></div> </div> </div> </div></body></html>