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Maryam,
<div>I think you are trying to show only one half of the contact map, and this is the info I got when I was trying to do the same thing. I ended up not following up, but it looks like if you download the older version, you should be able to do it.</div>
<div>Good luck,</div>
<div>Sheila</div>
<div><br>
</div>
<div>ps I have no expertise with CMView, just a fan, so sorry if this doesn't work, but I can't help trouble shoot!<br>
<div><br>
<div>Begin forwarded message:</div>
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<span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>From:
</b></span><span style="font-family:'Helvetica'; font-size:medium;">cmview-users-owner <<a href="mailto:cmview-users-owner@bioinformatics.org">cmview-users-owner@bioinformatics.org</a>><br>
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<span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Date:
</b></span><span style="font-family:'Helvetica'; font-size:medium;">March 21, 2013 5:25:40 PM EDT<br>
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<span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>To:
</b></span><span style="font-family:'Helvetica'; font-size:medium;">Sheila Jaswal <<a href="mailto:sjaswal@amherst.edu">sjaswal@amherst.edu</a>><br>
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<span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Cc:
</b></span><span style="font-family:'Helvetica'; font-size:medium;"><<a href="mailto:cmview-users@bioinformatics.org">cmview-users@bioinformatics.org</a>><br>
</span></div>
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<span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Subject:
</b></span><span style="font-family:'Helvetica'; font-size:medium;"><b>Re: how to show only one half of contact map?</b><br>
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<div>Hi Sheila,<br>
<br>
glad that you find our program useful. You are right, it is currently<br>
not possible to show only one half of the contact map. The screenshots<br>
are from an older version, where showing only one half was the<br>
default. If you don't mind using that older version (0.9.6), you can<br>
still download it from the CMView website:<br>
<br>
<a href="http://www.bioinformatics.org/cmview/download.html">http://www.bioinformatics.org/cmview/download.html</a><br>
<br>
If I find time, I will also add the option to hide either half to the<br>
latest version.<br>
<br>
Let me know if you have further questions and good luck with your research.<br>
<br>
Regards,<br>
Henning<br>
<br>
<br>
On Thu, Mar 21, 2013 at 8:31 AM, Sheila Jaswal <sjaswal@amherst.edu> wrote:<br>
<blockquote type="cite">Hi,<br>
</blockquote>
<blockquote type="cite">I really love CMView! I would like to only show the top right part of the<br>
</blockquote>
<blockquote type="cite">contact map, like you do in your screenshots. With the "overlays" button, I<br>
</blockquote>
<blockquote type="cite">can change what's being displayed in each half of the contact map, but I<br>
</blockquote>
<blockquote type="cite">don't get an option for not displaying anything.<br>
</blockquote>
<blockquote type="cite">I am using version 1.0.<br>
</blockquote>
<blockquote type="cite">Thanks for your help!<br>
</blockquote>
<blockquote type="cite">Sheila<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite">--<br>
</blockquote>
<blockquote type="cite">Sheila Jaswal<br>
</blockquote>
<blockquote type="cite">Assistant Professor<br>
</blockquote>
<blockquote type="cite">Biochemistry and Biophysics Program<br>
</blockquote>
<blockquote type="cite">Department of Chemistry<br>
</blockquote>
<blockquote type="cite">Amherst College<br>
</blockquote>
<blockquote type="cite">PO Box 5000<br>
</blockquote>
<blockquote type="cite">Merrill Science 504<br>
</blockquote>
<blockquote type="cite">Amherst, MA 01002-5000<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite">telephone: 413-542-5153<br>
</blockquote>
<blockquote type="cite">fax: 413-542-2735<br>
</blockquote>
<blockquote type="cite">email: sjaswal@amherst.edu<br>
</blockquote>
<blockquote type="cite">http://www.amherst.edu/people/facstaff/sjaswal<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
</div>
</blockquote>
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