<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=us-ascii"><meta name=Generator content="Microsoft Word 14 (filtered medium)"><style><!--
/* Font Definitions */
@font-face
{font-family:Helvetica;
panose-1:2 11 6 4 2 2 2 2 2 4;}
@font-face
{font-family:Helvetica;
panose-1:2 11 6 4 2 2 2 2 2 4;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0cm;
margin-bottom:.0001pt;
font-size:11.0pt;
font-family:"Calibri","sans-serif";
mso-fareast-language:EN-US;}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
span.EmailStyle17
{mso-style-type:personal-compose;
font-family:"Calibri","sans-serif";
color:windowtext;}
.MsoChpDefault
{mso-style-type:export-only;
font-family:"Calibri","sans-serif";
mso-fareast-language:EN-US;}
@page WordSection1
{size:612.0pt 792.0pt;
margin:72.0pt 72.0pt 72.0pt 72.0pt;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]--></head><body lang=EN-GB link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>Dear CMView users,<o:p></o:p></p><p class=MsoNormal>I am a new user to CMView, so my apologies if this has been asked and answered before. I am studying the structure of a protein which is phosphorylated under certain conditions. I have the structures of both the phosphorylated and non-phosphorylated forms, and am using CMView to generate contact maps and compare the contacts within each structure under each condition in pymol. However, CMView is not able to recognise phosphorylated residues (phosphoserine, SEP, specifically). Is there a fix that I am able to implement so it will recognise phosphoserine? It may not make too much of a difference overall but I think it would help me with my analysis.<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Best wishes,<o:p></o:p></p><p class=MsoNormal>Pryank<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'>Pryank Patel<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'>School of Life and Medical Sciences<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'>University of Hertfordshire<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'>Hatfield<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'>Hertfordshire<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'>AL10 9DB<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Helvetica","sans-serif";mso-fareast-language:EN-GB'><a href="mailto:p.patel42@herts.ac.uk"><span style='color:blue'>p.patel42@herts.ac.uk</span></a><o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>