From bizzaro@bc.edu Sat Sep 11 19:17:54 1999 From: bizzaro@bc.edu (J.W. Bizzaro) Date: Sat, 11 Sep 1999 18:17:54 +0000 Subject: [dnd] what's up? Message-ID: <37DA9CD2.4912FCF6@bc.edu> Hey, How is DND coming along? I haven't heard anything for a while. Cheers. Jeff -- +----------------------------+ | J.W. Bizzaro | | jeff@theopenlab.uml.edu | | | | THE OPEN LAB | | Open Source Bioinformatics | | | | http://theopenlab.uml.edu/ | +----------------------------+ From yoo@pcp012468pcs.unl.edu Sun Sep 12 05:56:39 1999 From: yoo@pcp012468pcs.unl.edu (SooHaeng Yoo) Date: Sun, 12 Sep 1999 00:56:39 -0400 (EDT) Subject: [dnd] what's up? In-Reply-To: <37DA9CD2.4912FCF6@bc.edu> Message-ID: Hi ^^ I'm sorry that I didn't continue to work it. I am a graduate student of Univ. of Nebraska, and I am a RA. These days I researched the nucleation of gas at the supersaturation state by using Monte Carlo method. I also researched the Molecular dynamics simulation of TIP4P molecule. But I had the bugs in MD programs. Currently I didn't fix it yet. If I finish the MC program, I will study the MD. If I have the final program, I will upload it. Another problem is that CORBA (ORBit) is not stable in my experience. It showed the different response between alpha linux and i386 linux. Hmm, I hope that the stable version of DND will be opened in this December. But I will stop developing it continuously after it will be opened. After I graduate from the Univ. of Nebraska, I will be back for DND. Thank you for giving me web site for DND. On Sat, 11 Sep 1999, J.W. Bizzaro wrote: > Hey, > > How is DND coming along? I haven't heard anything for a while. > > > Cheers. > Jeff > -- > +----------------------------+ > | J.W. Bizzaro | > | jeff@theopenlab.uml.edu | > | | > | THE OPEN LAB | > | Open Source Bioinformatics | > | | > | http://theopenlab.uml.edu/ | > +----------------------------+ > > _______________________________________________ > dnd maillist - dnd@theopenlab.uml.edu > http://theopenlab.uml.edu/mailman/listinfo/dnd > From justin@ukans.edu Tue Sep 14 05:16:24 1999 From: justin@ukans.edu (Justin Bradford) Date: Mon, 13 Sep 1999 23:16:24 -0500 (CDT) Subject: [dnd] what's up? In-Reply-To: Message-ID: > I'm sorry that I didn't continue to work it. No problem. You've made a great start. > But I had the bugs in MD programs. Currently I didn't fix it yet. Yeah, none of it currently works for me. I haven't explored it yet, but I plan to commit any bugfixes I find. > If I finish the MC program, I will study the MD. > If I have the final program, I will upload it. The simulation component of DND is an extremely interesting project, and I'll begin working on it once a few other projects of mine are out of the way (like my undergraduate degree [this fall!] ;) > Another problem is that CORBA (ORBit) is not stable in my experience. It > showed the different response between alpha linux and i386 linux. Well, once it is working, the component interface to the visualization and simulation code will be extraordinarily useful. Once I have bonobo experience, I'll look into adding an interface for that, too. > Hmm, I hope that the stable version of DND will be opened in this > December. But I will stop developing it continuously after it will be > opened. > After I graduate from the Univ. of Nebraska, I will be back for DND. By spring, I should be able to do some DND development, so I'll try to keep the project alive until you return. Justin From yoo@pcp012468pcs.unl.edu Wed Sep 15 00:24:16 1999 From: yoo@pcp012468pcs.unl.edu (SooHaeng Yoo) Date: Tue, 14 Sep 1999 19:24:16 -0400 (EDT) Subject: [dnd] Thank you, Justin. In-Reply-To: Message-ID: From SooHaeng Yoo Thank you very much. On Mon, 13 Sep 1999, Justin Bradford wrote: > > Another problem is that CORBA (ORBit) is not stable in my experience. It > > showed the different response between alpha linux and i386 linux. > > Well, once it is working, the component interface to the visualization and > simulation code will be extraordinarily useful. Once I have bonobo > experience, I'll look into adding an interface for that, too. I expect that you find out what is the problem in my code. Did you see the following message? ---- " Gdk-Message: Got event for unknown window: 0x3c000ff " ---- During the MD simulation, the coordinates of results of the simulation is transfer via CORBA interface to OpenGL viewer. The upper message means that the OpenGL viewer window is unknown. I hope that you will get what I want to say. > By spring, I should be able to do some DND development, so I'll try to > keep the project alive until you return. Thank you. From Andrej.Prsa@Guest.Arnes.Si Wed Sep 29 18:04:15 1999 From: Andrej.Prsa@Guest.Arnes.Si (root) Date: Wed, 29 Sep 1999 17:04:15 +0000 Subject: [dnd] Problems with DnD 5.0.1 Message-ID: <37F2468E.FBF82D60@Guest.Arnes.Si> Hello! I downloaded the DnD 5.0.1 and have failed to install it correctly. The problem is in a file dnd.directory, which does not exist in my distribution. I tried to make it myself, but it still doesn't work. When I start dndcc, I get an error message like "GNOME or dndcc installed incorrectly, can't find sth in /usr/share/dnd or ~/.gnome/dnd.d". I presumed it's because of dnd.directory. Any clues? Thanks! Andrej From yoo@pcp012468pcs.unl.edu Thu Sep 30 03:24:41 1999 From: yoo@pcp012468pcs.unl.edu (SooHaeng Yoo) Date: Wed, 29 Sep 1999 22:24:41 -0400 (EDT) Subject: [dnd] Problems with DnD 5.0.1 (fwd) Message-ID: ---------- Forwarded message ---------- Date: Wed, 29 Sep 1999 14:12:29 -0400 (EDT) From: SooHaeng Yoo To: root Subject: Re: [dnd] Problems with DnD 5.0.1 Hi ^^ On Wed, 29 Sep 1999, root wrote: > I downloaded the DnD 5.0.1 and have failed to install it correctly. The > problem is in a file dnd.directory, which does not exist in my > distribution. I tried to make it myself, but it still doesn't work. When > I start dndcc, I get an error message like "GNOME or dndcc installed > incorrectly, can't find sth in /usr/share/dnd or ~/.gnome/dnd.d". I > presumed it's because of dnd.directory. Any clues? Thanks! You can download a file 'dnd.directory' by using internet. Please visit 'dnd-module', http::/theopenlab.uml.edu/cgi-bin/cvsweb.cgi/dnd. You can see it. If you download it, type the following command : 'cp dnd.directory ~/.gnome/dnd.d/.directory' Have a good luck!! P.S. I need to fix md module which has too many bugs. If you want to run MD with DND package, I don't recommand it for time being. I welcome you use my code for your interest.