[Genquire-dev] dbObj

[David Block]

There is no real problem with the GQ::Server modules - they are in docs 
or in little-used methods that need to be reworked, but aren't on the 
priority list.

I'm defending my honour here- I worked pretty hard at moving stuff into 
the Adaptor layers.

Dave

On Tuesday, December 18, 2001, at 09:44  AM, Mark Wilkinson wrote:

> David Block wrote:
>
>> DbObj is context-specific - for a certain network xml adaptor I am
>> writing, it is called Session.
>
> Okay, I see that...  but it appears that the Adaptor layer hasn't quite 
> been
> fully ripped out of Genquire itself yet.
>
> The following files *outside* of the Adaptor layer make calls to ->dbh:
>
> txtHandAnnotate (my problem)
> QueryScreen->getBlastHit (my problem)
>
> GQ::Server::Feature
> GQ::Server::Sequence
> GQ::Server::Transcript
>
> This means that Genquire will not, as it stands, work off of a flat-file
> since flat files have no dbh.  Whatever calls these modules are making 
> will
> have to be pulled down into the adaptor layer...
>
> I am presuming that you will hit the same problem with your xml adaptor 
> as I
> just did with my GB Flat file adaptor so I'll deal with the first two 
> if you
> deal with the Server feature problems :-)
>
> M
>
>
>
> --
> --------------------------------
> "Speed is subsittute fo accurancy."
> ________________________________
>
> Dr. Mark Wilkinson
> Bioinformatics Group
> National Research Council of Canada
> Plant Biotechnology Institute
> 110 Gymnasium Place
> Saskatoon, SK
> Canada
>
>
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>
>
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>
David Block          (858)812-1513
Bioinformatics        http://www.gnf.org
dblock@gnf.org        Just ridin' the Coaster...