[ghemical-devel] Gamess / Toggle Patches

Tommi Hassinen thassine at messi.uku.fi
Tue Mar 28 05:47:27 EST 2006


On Mon, 27 Mar 2006, Donald Ephraim Curtis wrote:

> Tommi, i'm just curious why there is even a "max" distance included
> anyways.

That can be useful in molecular dynamics, where molecules often drift 
apart from each other ; assigning a max distance constraint will keep the 
molecules together (and make them collide). It can also be useful if you 
study a complex (say, a protein + ligand system) which easily breaks but 
you want to keep it intact.

 	Tommi



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