[ghemical-devel] 1,4-scaling in ghemical tripos-5.2 forcefield
Tommi Hassinen
thassine at messi.uku.fi
Wed Feb 28 08:24:43 EST 2007
Hello Tim,
and sorry for the late answer. I have not had time to look at the problem
yet, I only briefly looked at tripos-5.2 original paper. I tried to find
there what the 1,4 scaling factor should be, but I didn't find it so far.
Do you know what the scaling factor should be in tripos-5.2?
Regards,
Tommi
On Fri, 23 Feb 2007, Tim Vandermeersch wrote:
> Hello,
>
> First of all I would like to thank you (Tommi Hassinen) for your help with
> the example programs to make libghemical perform batch energy calculations.
>
> While validating the openbabel implementation of the ghemical
> (tripos-5.2like) I noticed that not all 1,4 non-bonded interactions
> are scaled? For
> example the three interactions in a benzene ring between opposite atoms is
> not scaled. But since there are other similar cases (cyclo-hexane, special
> ring sytems with bridges, ...), I was not able to find a consistent rule
> that could be applied.
> Could anyone tell me more about the 1,4-scaling in ghemical or point me in
> the right direction?
>
> Thanks in advance,
> Tim Vandermeersch
More information about the ghemical-devel
mailing list