[ghemical-users] Conformer Generation in ghemical
Andrew D. Fant
fant at pobox.com
Wed Nov 1 15:57:54 EST 2006
I have two related questions about ghemical and it's conformational search tools.
1) After the conformers are generated in a random or systemic search, is any
sort of analysis applied to eliminate ones that are duplicates of other
conformers? Failing this, is it possible to generate a simulated annealing
process in the molecular dynamics code?
2) Is there a way to generate an output file of the first n conformers in sdf or
mol format, or as a set of files in some other format?
Thanks.
Andy
--
Andrew Fant | And when the night is cloudy | This space to let
Molecular Geek | There is still a light |----------------------
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Boston, MA | Shine until tomorrow, Let it be | even speak for myself
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