[Molvis-list] Docking in Rasmol?

[Gale Rhodes]

Hi, Michael!

DeepView (aka SwissPdbViewer) will do it.

See

http://www.usm.maine.edu/spdbv/

and

http://www.usm.maine.edu/~rhodes/SPVTut/index.html

Cheers!

Gale Rhodes

On Apr 14, 2006, at 1:30 AM, Michael Sternberg wrote:

> Hello,
>
> I am looking for a program which can read multiple molecules and  
> allows the user to reorient each one and save the combination,  
> i.e., supports a "docking" feature.
>
> Now, Rasmol-2.7.x does support multiple molecules and can save each  
> one in its present orientation (at least in the alchemy format),  
> but does not track translation.  This is tantalizingly close.
>
> What's needed is essentially a displacement correction upon "write  
> <format> <file>".  Do the current internal data structures support  
> such an extension?
>
>
> Regards, Michael
> -- 
> Michael Sternberg, Ph.D.         | Argonne National Laboratory
> phone: (630) 252-7020 fax: -9555 | Materials Science Div., Building  
> 200
> email: sternberg.at.anl.gov      | 9700 S Cass Ave, Argonne, IL  
> 60439-4831
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Gale Rhodes, Professor of Chemistry
University of Southern Maine
PO Box 9300
Portland, Maine 04104-9300
http://www.usm.maine.edu/~rhodes