On Apr 14, 2006, at 12:01 PM, A. Malcolm Campbell wrote: > I just tried out 0.99 using OS 10.4.6 using Safari 2.03. Find > worked perfectly and I like it a lot. > > I tried contacts and the first time, it crashed when I made my > display selections and then clicked on the molecule. Hi Malcolm, I am also on OSX 10.4.6 and Safari 2.03, and I'd like to try to reproduce this - Can you clarify what you mean by 'display selections' ? Do you mean using Find to select a Target for contacts? Frieda > I tried a second time when I clicked on my molecule first and then > made my display choices and clicked on the link that said show > contacts and it worked fine. Very nice display with good support text. > > I like both of these features a lot. Very powerful in combination, > too. > > Malcolm > > > On Apr 13, 2006, at 9:09 PM, Eric Martz wrote: > >> I have put a pre-release of FirstGlance in Jmol 0.99 at >> >> http://bioinformatics.org/firstglance/fgij >> >> Please try this new version and let me know of any unexpected >> results, bugs, or suggestions. I anticipate that after a settling/ >> debugging period of about a week, 0.99 will supercede the present >> public version 0.98 (at firstglance.jmol.org). I have tested >> Windows IE/Firefox, and Mac OSX 10.3.9 Safari/Firefox. (I don't >> have OSX 10.4.) >> >> MAJOR NEW FEATURES IN 0.99 >> >> -- A "Find.." dialog that highlights residues specified with >> sequence numbers or ranges. Something along this line was >> requested by NSMB before Evelyn Jabri departed. A link, with >> explanation, to Dunbrack's S2C listing -- available from "Find.." >> or "More Views..". S2C reveals gaps in the structural coordinates, >> typically due to crystallographic disorder. >> >> -- A "Contacts.." dialog that shows non-covalent bonds between any >> "target" you select (usually by clicking on it) and the remainder >> of the model. Non-covalent bonds are divided into five types, and >> each type can be shown or hidden. "Contacts.." required by far the >> largest amount of code among all the features of FirstGlance, but >> I thought it well worth the effort. >> >> -- All salt bridges or cation-pi interactions can be shown from a >> new link under More Views.. >> >> List of all changes in this version: >> http://bioinformatics.org/firstglance/fgij/versions.htm >> >> The main enhancement planned between version 0.99 and future >> version 1.0 is support for translations to Spanish and other >> languages. >> >> -Eric >> >> /* - - - - - - - - - - - - - - - - - - - - - - - - - - - >> Eric Martz, Professor Emeritus, Dept Microbiology >> U Mass, Amherst -- http://www.umass.edu/molvis/martz >> >> Biochem 3D Education Resources http://MolviZ.org >> See 3D Molecules, Install Nothing! - http://firstglance.jmol.org >> Protein Explorer - 3D Visualization: http://proteinexplorer.org >> Workshops: http://workshops.proteinexplorer.org >> World Index of Molecular Visualization Resources: http:// >> molvisindex.org >> ConSurf - Find Conserved Patches in Proteins: http:// >> consurf.tau.ac.il >> Atlas of Macromolecules: http://atlas.proteinexplorer.org >> PDB Lite Macromolecule Finder: http://pdblite.org >> Molecular Visualization EMail List (molvis-list): >> http://bioinformatics.org/mailman/listinfo/molvis-list >> - - - - - - - - - - - - - - - - - - - - - - - - - - - */ >> >> _______________________________________________ >> Molvis-list mailing list >> Molvis-list at bioinformatics.org >> https://bioinformatics.org/mailman/listinfo/molvis-list >> > > > ________________________________________________________ > A. Malcolm Campbell, Ph.D. > Associate Professor of Biology > Davidson College > Director of GCAT (www.bio.davidson.edu/GCAT) > > Box 7118 (US Mail) > 209 Ridge Road (shipping) > Davidson, NC 28036 > 704-894-2692 (phone) > 704-894-2512 (fax) > www.bio.davidson.edu/campbell > > _______________________________________________ > Molvis-list mailing list > Molvis-list at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/molvis-list /////////////////////////////////////////// Frieda Reichsman, PhD Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com ///////////////////////////////////////////