From emartz at microbio.umass.edu Mon Apr 28 00:30:32 2014 From: emartz at microbio.umass.edu (Eric Martz) Date: Mon, 28 Apr 2014 00:30:32 -0400 Subject: [Molvis-list] FirstGlance 2.00 released Message-ID: <201404280430.s3S4UdSI027135@marlin.bio.umass.edu> I have today released FirstGlance in Jmol version 2.00. As always, http://FirstGlance.Jmol.Org This version needs no Java. By default, it uses JSmol (no Java), so it can run on computers where Java is not installed, or is unavailable (such as iPads). It can also run with Java, which greatly improves speed, performance, and smoothness of rotation of the molecule. There is a new Preferences tab, in which you can set it to default to using Java. Installing and enabling Java in various web browsers has become more and more challenging, so detailed instructions are linked to the Preferences tab. This version has no new capabilities for molecular display. It mainly makes using JSmol without Java much more user friendly (I hope!). Feedback welcome. There is always more to do but feedback can alert me to issues I've overlooked, and help me set priorities. Eric /* - - - - - - - - - - - - - - - - - - - - - - - - - - - Eric Martz, Professor Emeritus, Dept Microbiology U Mass, Amherst -- http://Martz.MolviZ.Org Top Five 3D MolVis Technologies http://Top5.MolviZ.Org FirstGlance: 3D Views in Nature - http://firstglance.jmol.org 3D Protein Wiki with Scene-Authoring Tools http://Proteopedia.Org Biochem 3D Education Resources http://MolviZ.org ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il Atlas of Macromolecules: http://atlas.molviz.org Interactive Molecules in Public Spaces http://MolecularPlayground.Org Workshops: http://workshops.molviz.org - - - - - - - - - - - - - - - - - - - - - - - - - - - */ From emartz at microbio.umass.edu Sat Jun 21 12:39:39 2014 From: emartz at microbio.umass.edu (Eric Martz) Date: Sat, 21 Jun 2014 12:39:39 -0400 Subject: [Molvis-list] FirstGlance in Jmol version 2.1 Message-ID: <201406211639.s5LGdr0d000349@marlin.bio.umass.edu> FirstGlance in Jmol version 2.1 was released about a week ago. In addition to many bug fixes, this version adds preferences to avoid spinning at the beginning of every session, and to hide suggestions for a faster browser or to use Java. As with the two previous versions, Java is not required. http://FirstGlance.Jmol.Org (click on the version number for a list of changes) Eric /* - - - - - - - - - - - - - - - - - - - - - - - - - - - Eric Martz, Professor Emeritus, Dept Microbiology U Mass, Amherst -- http://Martz.MolviZ.Org Top Five 3D MolVis Technologies http://Top5.MolviZ.Org FirstGlance: 3D Views in Nature - http://firstglance.jmol.org 3D Protein Wiki with Scene-Authoring Tools http://Proteopedia.Org Biochem 3D Education Resources http://MolviZ.org ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il Atlas of Macromolecules: http://atlas.molviz.org Interactive Molecules in Public Spaces http://MolecularPlayground.Org Workshops: http://workshops.molviz.org - - - - - - - - - - - - - - - - - - - - - - - - - - - */ From emartz at microbio.umass.edu Sun Jun 22 13:57:16 2014 From: emartz at microbio.umass.edu (Eric Martz) Date: Sun, 22 Jun 2014 13:57:16 -0400 Subject: [Molvis-list] Running old Jmol tutorials (unsigned applets) Message-ID: <201406221757.s5MHvgUn021881@marlin.bio.umass.edu> At http://proteopedia.org/w/Installing_and_enabling_Java I have added instructions (at the end) for enabling Java to display unsigned Java applets. Its great that we can still do this for all those legacy Jmol tutorials that are still out there! You can find links to many of these tutorials at http://molviz.org If you find these instructions to be incomplete or confusing, please let me know! Eric