[OpenMMS] using pdbase for loading files in MySQL

[Thomas Juettemann]

Dear all,

I am newbie using mmCIF files, apologies for the low level questions.
I am also very happy if you can point me to a tutorial or example page! ;)

The db scheme was created correctly using CreateMmsMySQL.sql and InitMMs.sql

I managed to start pdbase:
java \
  -classpath 
.:/usr/java/jre1.5.0_07/lib/ext/biojava-1.4.jar:/home/tj/OpenMMS-1.5.1_Std/openmms/classes/OpenMMS.jar:/usr/java/mysql-connector-java-5.0.5/mysql-connector-java-5.0.5-bin.jar 
\
    -Xmx1500M \
    org.rcsb.openmms.apps.rdb.PDBase \
    LenientParse \
    data=ftp://beta.rcsb.org/pub/pdb/uniformity/data/mmCIF.gz/all \
    manifest=ftp://ftp.rcsb.org/pub/pdb/ls-lR \
    log=PDBASE.LOG \
    debug=5

The connection to my local database was fine

First a got a connection timeout which probably comes from the wrong 
data and manifest link. I corrected this to:

data=ftp://ftp.rcsb.org/pub/pdb/data/structures/all/mmCIF
manifest=ftp://ftp.rcsb.org/pub/pdb/data/structures/ls-lR

I tried "Load all entries in Manifest" but just received file not found 
errors.

Then I tried to load files in

/home/tj/OpenMMS-1.5.1_Std/openmms/data/lists/StructureIDs.list

I used names like: 1fnt and 1fnt.cif.Z

but same error.

Same with putting names manually "Load this list of entries"

Can anyone point me to my error?

Thanks a lot,
Thomas