[OpenMMS] Openmms Error

Zia Mohaddes mohadesz at gmail.com
Fri May 25 18:10:00 EDT 2007


I am currently using your openmms package for my master program on the
linux. But unfortunately I am currently getting an error when I try to load
the mmcif data to the database , by running the pdbase shell script located
in ../OpenMMS-1.5.1_Std/openmms/run/unix. The error that I get is as follow:

Exception in thread "main" java.lang.ClassNotFoundException:
org.omg.CORBA.ORB not found in gnu.gcj.runtime.SystemClassLoader{urls=
,file:/u/mohaddez/HE/workspace/mysql-connector-java-3.1.8-bin.jar], parent=
gnu.gcj.runtime.ExtensionClassLoader{urls=[], parent=null}}
   at java.net.URLClassLoader.findClass(java.lang.String)
   at java.lang.ClassLoader.loadClass(java.lang.String, boolean)
   at java.lang.ClassLoader.loadClass(java.lang.String)
   at org.rcsb.openmms.apps.rdb.PDBase.execute(java.lang.String[]) (Unknown
   at org.rcsb.openmms.apps.rdb.PDBase.main(java.lang.String[]) (Unknown
   at .main (/usr/lib64/libgij.so.6.0.0)
   at .__libc_start_main (/lib64/libc-2.3.6.so)

I have changed the _vars.sh file with my own local variables and made sure
JAVA_BIN_DIR and and other variables point to the right directory on my
I have also looked inside the classes folder but I didn't find an
org.omg.Corba folder.

Can you please help me with this.

Your help is greatly appreciated.

Best regards,

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