[Owl-devel] Aminoacid reduced alphabets
stehr at molgen.mpg.de
Wed Jun 2 11:06:16 EDT 2010
Nice! We should enter our AminoAcid class into a competition for
"coolest Java enum" :)
On Wed, Jun 2, 2010 at 4:37 PM, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
> I've added to the AminoAcid enum fields to store aminoacid reduced alphabet
> classes and added the data for alphabets of 15, 10, 8, 6, 4 and 2 groups.
> These are taken from Murphy et al. 2000 Protein Engineering and the 6-groups
> one from Mirny and Shakhnovich 1999 JMB.
> I am using those to calculate sequence entropies based on different
> alphabets (see MultipleSequenceAlignment.getColumnEntropy) but somebody
> might find them useful for something else.
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