[I'm resending this that I posted earlier to Dan, so that it gets archived. It might be helpful to someone]<br><br><br><br>Hi Dan <br><br>You can check out the script make-<span class="il">owl</span>.sh with:<br><br>svn export svn://<a href="http://bioinformatics.org/svnroot/owl/trunk/scripts/make-owl.sh" target="_blank">bioinformatics.org/svnroot/<span class="il">owl</span>/trunk/scripts/make-<span class="il">owl</span>.sh</a><br>
<br><br>Then run it in a temp dir:<br><br>./make-<span class="il">owl</span>.sh svn://<a href="http://bioinformatics.org/svnroot/owl/trunk" target="_blank">bioinformatics.org/svnroot/<span class="il">owl</span>/trunk</a> .<br>
<br>that should give you one jar file trunk.jar<br><br>after that get all the jar dependencies:<br>
<br>svn export svn://<a href="http://bioinformatics.org/svnroot/owl/trunk/jars" target="_blank">bioinformatics.org/svnroot/<span class="il">owl</span>/trunk/jars</a><br><br>And this script should run then the genGraph program:<br>
<br>--------<br>#!/bin/sh<br><br>
jarfiles=`ls jars/*.jar`<br>CLASSPATH="."<br>for jarfile in $jarfiles<br>do<br> CLASSPATH="$jarfile:$<div id=":si" class="ii gt">CLASSPATH"<br>done<br><br>CLASSPATH=trunk.jar:$CLASSPATH<br><br>java genGraph $@<br>
<br>--------<br>
<br>Jose<br><font color="#888888"><br></font><div><div class="im"><br><br><br><br><br><div class="gmail_quote">On 24 February 2010 12:34, Dan Bolser <span dir="ltr"><<a href="mailto:dan.bolser@gmail.com" target="_blank">dan.bolser@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div>On 24 February 2010 11:30, Filippis, Ioannis <<a href="mailto:i.filippis@imperial.ac.uk" target="_blank">i.filippis@imperial.ac.uk</a>> wrote:<br>
> Have a look at <a href="http://bioinformatics.org/" target="_blank">bioinformatics.org</a> / Jose's mail about it.<br>
><br>
> I will try to find an easy example how to generate graphs based on it<br>
<br>
</div>Cheers Ioannis, just catching up.<br>
<br>
All the best,<br>
<font color="#888888">Dan.<br>
</font><div><div><br>
<br>
> Ioannis<br>
> ________________________________________<br>
> From: Dan Bolser [<a href="mailto:dan.bolser@gmail.com" target="_blank">dan.bolser@gmail.com</a>]<br>
> Sent: 24 February 2010 11:28<br>
> To: Filippis, Ioannis<br>
> Subject: Re: Random question about res-res contacts<br>
><br>
> On 24 February 2010 11:22, Filippis, Ioannis <<a href="mailto:i.filippis@imperial.ac.uk" target="_blank">i.filippis@imperial.ac.uk</a>> wrote:<br>
>> With graph generation code you mean creating a RIG or
calculating graph properties? The first is in aglappe (now open-source)
and the second is in one of the svn repositories in black. I can give
you the second one if you want it.<br>
><br>
> I'm after the former. Where can I get it?<br>
><br>
><br>
> Cheers,<br>
> Dan.<br>
></div></div></blockquote></div></div></div></div>