Cheers Henning<br><br>That's awesone. I surely will be using some of those soon. I will also need to do quite a lot with Uniprot so definitely the UniprotConnector will be also very useful for me.<br><br>If you need help with that just let me know.<br>
<br>Jose<br><br><br><br><br><br><br><div class="gmail_quote">On 16 March 2010 15:07, Henning Stehr <span dir="ltr"><<a href="mailto:stehr@molgen.mpg.de">stehr@molgen.mpg.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Dear developers,<br>
<br>
I have just commited a new package owl.connections which is supposed<br>
to contain connector classes to online databases and services.<br>
<br>
The first such classes are<br>
<br>
PhosphoSitePlusConnection - for accessing a popular database of<br>
posttranslational modifications and<br>
PDomainsConnection - for accessing a very useful webservice which<br>
calculates structural domains using a variety of methods including<br>
Scop, Cath, DomainParser, ProteinDomainParser and others<br>
<br>
The results of such queries are implemented using the feature<br>
interface (see owl.features):<br>
<br>
PhosphoSitePlusFeature - for protein modifications from PhosphoSitePlus<br>
StructuralDomainFeature - for structural domains from pDomains<br>
<br>
Such features can be added to any structure or sequence object<br>
implementing the owl.features.HasFeatures interface.<br>
<br>
Two more classes that will probably be added to the package later are:<br>
<br>
PrositeScanner - currently in owl.proteinstructure<br>
UniprotConnector - already working for me but need to sort out some<br>
things with dependencies before commiting<br>
<br>
Cheers,<br>
Henning<br>
<br>
_______________________________________________<br>
Owl-devel mailing list<br>
<a href="mailto:Owl-devel@bioinformatics.org">Owl-devel@bioinformatics.org</a><br>
<a href="http://www.bioinformatics.org/mailman/listinfo/owl-devel" target="_blank">http://www.bioinformatics.org/mailman/listinfo/owl-devel</a><br>
</blockquote></div><br>