[Pdbwiki-devel] checking remediated pdbs
Jose M. Duarte
jose.m.duarte at gmail.com
Fri Jul 17 05:18:23 EDT 2009
2009/7/17 Dan Bolser <dan.bolser at gmail.com>
> Looking at the 'format errors' (11), six are simply warnings:
> 'Warning! There are more than 26 chains in this PDB entry!'
> This information was included as it can confuse people new to the PDB
> (the chain code is usually a single, case insensitive character).
> However, I guess they are not strictly format errors... (or are they?)
> What category should this information be put in? They are certainly
> less interesting than the other five 'format errors'!
> I guess Category:General comment? "This category is to tag all PDB
> entry annotations that do not fit into any other categories"?
Agreed, General comment is probably better
> Fixed in remediation!
> Two of the remaining 5 'format errors' has been fixed in remediation:
> Should we delete the comment or somehow annotate the entry to reflect this
> Interestingly, the last one (1ob5) had a similar error to another
> entry (1csm), which *has not* been fixed in the remediation.
Cool! finally one of our annotations fixed! I'd go for adding a comment that
the problem has been fixed in revision so and so and then categorize it as
> Are there any 'bug tracker' extensions for MW?
Actually there is!
We should give it a go at some point!
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