[Pdbwiki-devel] still problems with pubmed extension

Henning Stehr stehr at molgen.mpg.de
Tue Aug 3 10:38:35 EDT 2010


After the move to moya the pubmed extension is making some trouble. I
have tried to insert different pubmed ids in the Sandbox page.
Here is the outcome:

1. PubmedID 20624717 (PDBWiki paper)
Notice: Undefined index: PubmedArticleSet in
/amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
on line 74

2. PubmedID 10531479 (was working before)
works

3. PubmedID 19228942 (working for 1amu)
works in preview but after saving gives:
Notice: Undefined index: PubmedArticleSet in
/amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
on line 74

4. PubmedID 18034855 (not working for 2hr0)
does not work in preview
Notice: Undefined index: PubmedArticleSet in
/amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
on line 74

5. PubmedID 20627166 (random paper)
on preview, does not even show page, only blank page with error message
Could not open file /tmp/pubmedcache/d4/ for writing, at Persistant::save

6. PubmedID 10531470 (random number)
Notice: Undefined index: PubmedArticleSet in
/amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
on line 74


Ok, so I think there are two different issues here: The Notice...
error message means that the pubmed id was not found as indicated by
6. Actually this may have to do with the fact that Pubmed is currently
down(?!).
The other thing is the error for 5. which is the same on page
http://pdbwiki.org/index.php/2hr0. Wait! Now this page is displayed!
Just not the references. Did anyone disable the plugin?



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