[Pdbwiki-devel] still problems with pubmed extension

[Henning Stehr]

I can confirm that Pubmed seems to have technical problems at the
moment. Earlier, http://www.ncbi.nlm.nih.gov/pubmed/20624717 was
showing the correct article. Just a minute ago I got
"This PMID does not exist", and now I'm getting a blank page. We
should probably wait until they have fixed their stuff before we
continue testing the extension.

Henning

On Tue, Aug 3, 2010 at 4:44 PM, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
>
>> Here is the outcome:
>>
>> 1. PubmedID 20624717 (PDBWiki paper)
>> Notice: Undefined index: PubmedArticleSet in
>>
>> /amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
>> on line 74
>>
>> 2. PubmedID 10531479 (was working before)
>> works
>>
>> 3. PubmedID 19228942 (working for 1amu)
>> works in preview but after saving gives:
>> Notice: Undefined index: PubmedArticleSet in
>>
>> /amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
>> on line 74
>>
>> 4. PubmedID 18034855 (not working for 2hr0)
>> does not work in preview
>> Notice: Undefined index: PubmedArticleSet in
>>
>> /amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
>> on line 74
>>
>> 5. PubmedID 20627166 (random paper)
>> on preview, does not even show page, only blank page with error message
>> Could not open file /tmp/pubmedcache/d4/ for writing, at Persistant::save
>>
>> 6. PubmedID 10531470 (random number)
>> Notice: Undefined index: PubmedArticleSet in
>>
>> /amd/moya/1/project/pdbwiki/htdocs/mediawiki-1.15/extensions/Pubmed/Pubmed.php
>> on line 74
>>
>>
>
> Nice thanks for the summary.
>
>>
>> Ok, so I think there are two different issues here: The Notice...
>> error message means that the pubmed id was not found as indicated by
>> 6. Actually this may have to do with the fact that Pubmed is currently
>> down(?!).
>> The other thing is the error for 5. which is the same on page
>> http://pdbwiki.org/index.php/2hr0. Wait! Now this page is displayed!
>> Just not the references. Did anyone disable the plugin?
>>
>
> I didn't touch anything! and there doesn't seem to be any edits... Caching
> at some level??
>
> Jose
>