Jeff, I work with Dr. Harrison at Thomas Jefferson University. FYI. Quoting J.W. Bizzaro (bizzaro at bc.edu): > The AMMP author replies to my message (intro to Loci): > Return-Path: <harrison at asterix.jci.tju.edu> > Received: from corot.bc.edu (corot.bc.edu [136.167.2.209]) > by moa.bc.edu (8.8.7/8.8.7) with ESMTP id JAA88656 > for <bizzaro at moa.bc.edu>; Tue, 13 Apr 1999 09:40:01 -0400 > Received: (from root at localhost) > by corot.bc.edu (8.8.7/8.8.7) with X.500 id JAA96826 > for bizzaro at mail3.bc.edu; Tue, 13 Apr 1999 09:40:01 -0400 > Received: from asterix.jci.tju.edu (asterix.JCI.TJU.EDU [147.140.128.146]) > by corot.bc.edu (8.8.7/8.8.7) with ESMTP id JAA06194 > for <bizzaro at bc.edu>; Tue, 13 Apr 1999 09:40:00 -0400 > Received: (from harrison at localhost) > by asterix.jci.tju.edu (8.9.3/8.9.3) id JAA17513; > Tue, 13 Apr 1999 09:49:41 -0400 (EDT) > Date: Tue, 13 Apr 1999 09:49:40 -0400 (EDT) > From: robert w harrison <harrison at asterix.jci.tju.edu> > To: "J.W. Bizzaro" <bizzaro at bc.edu> > Subject: Re: The Loci Project > In-Reply-To: <371284FA.ABA38EAE at bc.edu> > Message-ID: <Pine.SGI.3.91.990413093430.17482A-100000 at asterix.jci.tju.edu> > MIME-Version: 1.0 > Content-Type: TEXT/PLAIN; charset=US-ASCII > > The idea of incorparating ammp into loci is of some interest. One > of the design goals of ammp was to develop a program that could be > included in others without a big deal of fuss (i was originally thinking > in terms of a front-end language, and AMMP was the "n-ad" interpreter > sort of like the java virtual machine (well actually the idea was the > ucsd pascal machine)). This frontend has never been written, > but the ammp instruction set has settled into a slowly enough evolving > form that this could be done. Python is one of the languages i am evaluating > as a frontend language (perl would also do, so would javascript, but > i suspect these are a little big and inefficient). > > I can see where ammp would give loci needed new features, and can > see where loci can help with ammp (sequence database interfacing is > sort of crude and manual right now, chemical or small molecule database > interfacing would help with drug design and related sorts of problems). > In fact anything to improve program visibility is a good idea because > the NSF more or less requires that one demonstrate "impact" before > they give you money to develop programs. > > my only real concern right now is the degree of virtuality of the > project. most of the web pages are either self-referential or under > construction. So it looks like the project is just starting. > > none the less this is interesting, and we should chat some more on it. > > > rob > > robert w. harrison > robert.harrison at acm.org > harrison at asterix.jci.tju.edu > http://asterix.jci.tju.edu > (215)-503-4592 > ******************************************************************************** > > Organic chemistry is the chemistry of carbon compounds. > Biochemistry is the study of carbon compounds that crawl. > -- Mike Adams > > ******************************************************************************** > -- Dave Beck dave at arginine.umdnj.edu Sites of interest (set 4): Computer Science and Biology http://www.santafe.edu/projects/swarm/ Drexel University, Philadelphia PA http://www.drexel.edu/