[Pipet Devel] problem found
J.W. Bizzaro
jeff at bioinformatics.org
Thu Aug 2 22:16:18 EDT 2001
I found the source of the problem I had where the DL2BL IOR wasn't being
read. It turns out that it IS a timing problem. On line 71 of runpiper.py,
the IOR must be getting purged (as if old) after it is created:
os.system("rm ~/piper_info/ior/*")
So, I commented it out, and I get the messages I should (maybe not) get. Here
is the output with a pre-Copenhagen BL:
----------------------------------------------------
Starting processing layer...
Starting brokering layer...
Starting definition layer...
Starting pied...
Message: wrote IOR file /home/jeff/piper_info/ior/bl2pl.ior
Piper BL 0.5.0pre1
Thu Aug 2 22:05:52 2001 | 1 | Info | Accepted DL, created area 1
Thu Aug 2 22:05:52 2001 | 2 | Debug | Engine locked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 3 | Debug | Engine unlocked (from
resource::node_id_lock)
node_new: node pipeLine_NODE got allowedFilter
Thu Aug 2 22:05:52 2001 | 4 | Debug | Engine locked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 5 | Debug | Engine unlocked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 6 | Info | Registered node pipeLine_NODE to
area 1
Thu Aug 2 22:05:52 2001 | 7 | Warning | Node pipeLine_NODE failed to
initialise
Thu Aug 2 22:05:52 2001 | 8 | Debug | Engine locked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 9 | Debug | Engine unlocked (from
resource::node_id_lock)
node_new: node visual_NODE got allowedFilter
Thu Aug 2 22:05:52 2001 | 10 | Debug | Engine locked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 11 | Debug | Engine unlocked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 12 | Info | Registered node visual_NODE to area
1Thu Aug 2 22:05:52 2001 | 13 | Warning | Node visual_NODE failed to
initialiseThu Aug 2 22:05:52 2001 | 14 | Debug | Engine locked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 15 | Debug | Engine unlocked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 16 | Warning | Can not initialize a node
(unfinished node) with NULL function(s)
node_new: node unfinished node got allowedFilter
Thu Aug 2 22:05:52 2001 | 17 | Debug | Engine locked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 18 | Debug | Engine unlocked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 19 | Debug | Engine locked (from
legacy::load_plugin)
Thu Aug 2 22:05:52 2001 | 20 | Debug | Registered sensor_BL
Thu Aug 2 22:05:52 2001 | 21 | Info | Loading plugin
/usr/lib/libplugin_sensor_BL.so...
Thu Aug 2 22:05:52 2001 | 22 | Debug | Engine unlocked (from
legacy::load_plugin)
Thu Aug 2 22:05:52 2001 | 23 | Info | Registered node BL plugin sensor to
area 1
Thu Aug 2 22:05:52 2001 | 24 | Message | Node BL plugin sensor initialised
Thu Aug 2 22:05:52 2001 | 25 | Debug | Engine locked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 26 | Debug | Engine unlocked (from
resource::node_id_lock)
node_new: node BL plugin sensor Collector got allowedFilter Collects and
handles BL XML streams
Thu Aug 2 22:05:52 2001 | 27 | Debug | Engine locked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 28 | Debug | Engine unlocked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 29 | Info | Registered node BL plugin sensor
Collector to area 1
Thu Aug 2 22:05:52 2001 | 30 | Warning | Node BL plugin sensor Collector
failed to initialise
Thu Aug 2 22:05:52 2001 | 31 | Debug | Engine locked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 32 | Debug | Engine unlocked (from
resource::node_id_lock)
Thu Aug 2 22:05:52 2001 | 33 | Warning | Can not initialize a node
(unfinished node) with NULL function(s)
node_new: node unfinished node got allowedFilter
Thu Aug 2 22:05:52 2001 | 34 | Debug | Engine locked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 35 | Debug | Engine unlocked (from
resource::data_id_lock)
Thu Aug 2 22:05:52 2001 | 36 | Debug | Engine locked (from
legacy::load_plugin)
Thu Aug 2 22:05:52 2001 | 37 | Debug | Registered sensor_DL
Default location of the DL2BL IOR file: /home/jeff/piper_info/ior/dl2bl.ior
Getting document...
Aborted
--------------------------------------
I'll have to try the latest BL. What do you think Jarl? Is it ready?
This is why we need to make the layers/components runable stand-alone. I'll
try to get PiedPiper to run stand-alone by looping all signals back, sort of a
debug mode. It will let me work on it without some of the other components
being functional.
Jeff
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