[Proteopedia] Arbitrary scripts vs. state scripts
Eric Martz
emartz at microbio.umass.edu
Wed Feb 4 13:17:55 EST 2009
Re the thread: Script compiler error
I'd like to remind everyone that there is already a mechanism with
which you can send any arbitrary script to Jmol in Proteopedia. The
minor disadvantage (?) is that it uses a button instead of a green
link. I have used this mechanism in the "Toggle Animation" buttons at
http://proteopedia.org/wiki/index.php/Lac_repressor
Because toggling animation was something I needed at multiple places
in this article, and expect to use in other articles, I did it in a Template:
http://proteopedia.org/wiki/index.php/Template:Button_Toggle_Animation
but for a one-off script, it could equally well be literally embedded
in the page wiki text.
This mechanism could be used to load a saved surface data file, which
would provide a solution to Karl's problem that does not require
intervention from Eran or Jaim, the sys admins.
It is also possible to have a button that changes its text label,
e.g. shows [ ] vs. [x] when clicked. An example is here:
http://proteopedia.org/wiki/index.php/User:Eric_Martz/Sandbox_3
So you could have a button "Show Surface" that changes to "Hide
Surface" when it is clicked, or even goes through an intermediate 3rd
mode "Transparent Surface".
-Eric
At 1/30/09, lsprilus at weizmann.ac.il wrote:
>According to "Karl Oberholser" <oberhols at messiah.edu>:
> > The upgrade may have solved one problem, but there is still a problem. The
> > surface is still not displayed when the green link is clicked and the
> > following error is displayed in the Jmol console: io error reading
> > http://proteopedia.org/wiki/scripts/second.spt:
>
>Dear Karl,
>
>Fixed. Somehow the green link was altered and had "name='second'" instead
>of "target='second'" as it is generated by SAT. At the end, your page had
>name= twice on the same link, confusing Proteopedia on what to request from
>the server.
>
>The surface shows up now. Very nice, although it takes so long that your
>warning at the top might not be enough for keeping people on the same page.
>
>Jaim
>--
> Dr Jaime Prilusky | Jaime.Prilusky at weizmann.ac.il
> Head of Bioinformatics ISPC |
> R&D Bioinformatics and Data Management |
> Weizmann Institute of Science | fax: 972-8-9344113
> 76100 Rehovot - Israel | tel: 972-8-9344959
>
> OCA, http://oca.weizmann.ac.il (the protein structure/function database)
> Proteopedia, http://www.proteopedia.org (because life has more than 2D)
> ------------------------------------------------------------------------
>
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