[Proteopedia] Structural alignment?

[Angel Herráez]

Hi Dan

1.
You can certainly load two files into Jmol --not sure if you can do that within PP, but I'd say 
so since as far as I know you can specify any script.
Just do
   load files "file1.pdb" "file2.pdb"
or, if you want them straight from the PDB:
   load files "=1ABC" "=2ABC"

2.
For the rotation, I cannot advise about the exact format of the transform matrix, but there is 
   rotateSelected
which you could apply after selecting only one of the models. Also, check about 
quaternions, which are precisely for these matters (but I am unable to understand yet :( )


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