[Proteopedia] Difficulty making scenes
Oberholser, Karl
oberhols at messiah.edu
Wed Apr 25 11:26:07 EDT 2012
Hi All,
Am I the only one having difficulty making scenes since the upgrade of Jmol? One scene I made since then worked intermittently for a week or two and now is working consistently. All others have failed to function. I give some examples below.
I tried to make an opening scene for Collagen starting with proteopedia.org/scripts/Collagen/Fiber_segment/2.spt. I have made three attempts and with all three the scripts only contain exit:, http://proteopedia.org/scripts/Collagen/Initial/1.spt, proteopedia.org/scripts/Collagen/Opening/1.spt, and proteopedia.org/scripts/Collagen/Opening/2.spt.
The opening scene of Calculate Structure is the one that worked intermittently but now works consistently. proteopedia.org/scripts/Calculate_structure/Turn_110/2.spt is a a script that I wanted to update with commands now available in 12.3. Scripts http://proteopedia.org/scripts/Calculate_structure/Turn_110/3.spt, http://proteopedia.org/scripts/Calculate_structure/Turn_110/4.spt, and http://proteopedia.org/scripts/Calculate_structure/Turn_110/5.spt are my attempts to do that. With my level of understanding I do not see anything in these scripts that would be causing a problem.
I tried to upgrade the opening scene, http://proteopedia.org/scripts/Secondary_structure/1dtg_ss/1.spt, of Secondary structure with the new commands of 12.3, and these were my two attempts http://proteopedia.org/scripts/Secondary_structure/1dtg_ss/2.spt and http://proteopedia.org/scripts/Secondary_structure/1dtg_ss/3.spt. Again with my level of understanding I do not see anything that would cause a problem.
I am completely dumbfounded!
Karl
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/proteopedialist-for-users/attachments/20120425/6858f126/attachment.html>
More information about the Proteopedialist-for-users
mailing list