[Proteopedia] problem with uploaded gzipped file

[Eric Martz]

Dear Jaim and Angel,

Thank you for solving the gzip problem! I was 
mystified as was Angel. I had downloaded the file 
from Proteopedia and it loaded just fine into the Jmol application.

Eventually I will find time to investigate the 
scenes in various articles I wrote years ago that 
still work in Jmol (Java) but don't work in 
JSmol. I cannot promise when, however. Meanwhile, 
anyone else is welcome to jump in and fix some of those scenes!

Best regards, Eric

At 7/10/14, you wrote:
>Dear Ángel,
>
>Thank you again for bringing this up. The page 
>http://proteopedia.org/w/Gramicidin_Channel_in_Lipid_Bilayer now renders Ok.
>
>It took some time to find the source of the 
>problem: the loaded structure had a double gzip 
>compression. This is, uncompressing the .gz file 
>produced another file in gzip status. Only a 
>second gunzip produced a plain text structure content.
>
>I’m now checking and dealing with this in 
>Proteopedia, at the time of sending the file to JSmol.
>
>Jaim
>
>On Jul 9, 2014, at 7:39 PM, Angel Herráez <angel.herraez at uah.es> wrote:
>
> > Dear Proteopedians,
> >
> > Has any of you successfully used an uploaded gzipped model file?
> >
> > Today I noticed that this page
> > http://proteopedia.org/wiki/index.php/Gramicidin_Channel_in_Lipid_Bila
> > yer
> > does not load the model, showing errors in file format.
> >
> > I think that JSmol should load the gzipped file, for reasons I have
> > commented in
> > http://proteopedia.org/wiki/index.php/Talk:Gramicidin_Channel_in_Lipid
> > _Bilayer
> >
> > The Java modality loads the file without problem, so it must be
> > something related to loading binary files in JSmol.
> >
> > On the other hand, the model does display in the SAT when you are
> > creating a new scene, like in
> > http://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_5
> > but then it does not load in the page itself.
> >
> > Any hints?
> >
> > _______________________________________________
> > Proteopedialist-for-users mailing list
> > Proteopedialist-for-users at bioinformatics.org
> > http://www.bioinformatics.org/mailman/listinfo/proteopedialist-for-users
>
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Eric Martz, Professor Emeritus, Dept Microbiology
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