[Proteopedia] using pre-prepared PNGJ file in Proteopedia

Jaime Prilusky jaime.prilusky at weizmann.ac.il
Thu Dec 10 14:30:33 EST 2015


Dear Angel,

Drag and drop a PNGJ file on the JSmol applet of SAT.

Let me know how it goes, since here might be a conflict when saving the internal structure file, at the time of saving the new scene.

Eventually, we can try to implement the missing pieces.

Jaim
__
Dr Jaime Prilusky
R&D Bioinformatics and Data Management

mail: Jaime.Prilusky at weizmann.ac.il
OCA, http://oca.weizmann.ac.il (the protein structure/function database)
Proteopedia, http://proteopedia.org (because life has more than 2D)

> On 9 Dec 2015, at 7:12 PM, Angel Herráez <angel.herraez at uah.es> wrote:
> 
> Dear Proteopedians,
> 
> I am interested on the possibility of uploading and using in Proteopedia a file 
> prepared in Jmol application and saved to the PNGJ format.
> 
> These files have a PNG extension. I tried uploading to Proteopedia, it is seen 
> as an image (ok), then I create a scene and choose that "image" as the 
> source of molecule.
> JSmol loads it and finds the internal pdb or mol file, however the customized 
> style, color, orientation, contained in the PNGJ file is lost since SAT applies 
> its own default rendering.
> 
> So my question: is there a way to preserve the custom style (state script 
> saved as part of the PNGJ file) and avoid the default Proteopedia/SAT 
> styling?
> 
> Thans for any hints,
> 
> Angel
> 
> 
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