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<DIV>Eran,</DIV>
<DIV>The command that gives the desired effect for 'this surface' link is '<SPAN style="FONT-SIZE: 11pt; LINE-HEIGHT: 115%; FONT-FAMILY: 'Calibri','sans-serif'; mso-ascii-theme-font: minor-latin; mso-fareast-font-family: Calibri; mso-fareast-theme-font: minor-latin; mso-hansi-theme-font: minor-latin; mso-bidi-font-family: 'Times New Roman'; mso-bidi-theme-font: minor-bidi; mso-ansi-language: EN-US; mso-fareast-language: EN-US; mso-bidi-language: AR-SA">isosurface surface_cn "../images/b/ba/1kyo_cn.jvxl" backlit'. The position of the structure needs to be the same.</SPAN></DIV>
<DIV><SPAN style="FONT-SIZE: 11pt; LINE-HEIGHT: 115%; FONT-FAMILY: 'Calibri','sans-serif'; mso-ascii-theme-font: minor-latin; mso-fareast-font-family: Calibri; mso-fareast-theme-font: minor-latin; mso-hansi-theme-font: minor-latin; mso-bidi-font-family: 'Times New Roman'; mso-bidi-theme-font: minor-bidi; mso-ansi-language: EN-US; mso-fareast-language: EN-US; mso-bidi-language: AR-SA"></SPAN> </DIV>
<DIV><SPAN style="FONT-SIZE: 11pt; LINE-HEIGHT: 115%; FONT-FAMILY: 'Calibri','sans-serif'; mso-ascii-theme-font: minor-latin; mso-fareast-font-family: Calibri; mso-fareast-theme-font: minor-latin; mso-hansi-theme-font: minor-latin; mso-bidi-font-family: 'Times New Roman'; mso-bidi-theme-font: minor-bidi; mso-ansi-language: EN-US; mso-fareast-language: EN-US; mso-bidi-language: AR-SA">Karl</SPAN></DIV>
<DIV><SPAN style="FONT-SIZE: 11pt; LINE-HEIGHT: 115%; FONT-FAMILY: 'Calibri','sans-serif'; mso-ascii-theme-font: minor-latin; mso-fareast-font-family: Calibri; mso-fareast-theme-font: minor-latin; mso-hansi-theme-font: minor-latin; mso-bidi-font-family: 'Times New Roman'; mso-bidi-theme-font: minor-bidi; mso-ansi-language: EN-US; mso-fareast-language: EN-US; mso-bidi-language: AR-SA"></SPAN> </DIV>
<DIV><BR><BR>>>> Eran Hodis <eran.hodis@weizmann.ac.il> 2/2/2009 10:40 AM >>><BR>Karl,<BR><BR>Which green scene link(s) do you want to have recall this jvxl file?<BR><BR>Eran<BR><BR>-----Original Message-----<BR>>From Karl Oberholser <oberhols@messiah.edu><BR>Sent Mon 2/2/2009 5:15 PM<BR>To Forum for the Proteopedia User Community <proteopedialist-for-users@bioinformatics.org><BR>Subject Re: [Proteopedia] Surface computation & rendering (changedfromScript compiler error)<BR><BR>I have been able to render a surface using a jvxl file. The Jmol command<BR>that I used was isosurface surface_cn "../images/b/ba/1kyo_cn.jvxl ". The<BR>file url is relative to the url of the page. When I sent the command<BR>through the Jmol console, the surface appeared in one or two seconds. But<BR>through the green link the rendering take five minutes or more, but then<BR>ever since last Friday it has been taking all the green links
to respond.<BR><BR>Karl<BR><BR><BR>>>> Eran Hodis <eran.hodis@weizmann.ac.il> 1/30/2009 3:04 PM >>><BR>Karl,<BR><BR>Changed it so that jvxl is now a permitted file upload type. Give it a<BR>try.<BR><BR>What Angel said is exactly what we've wanted to do for a while now. We<BR>know that Proteopedia is not handling surface creation and display<BR>optimally, both with the menu offered for creation and manipulation of the<BR>surface in the Scene Authoring Tools, as well as with the fact that the<BR>surfaces must be recalculated each time rather than having them saved on the<BR>server for quick loading. Now seems like a good time to address the these<BR>issues on Proteopedia.<BR><BR>Eran<BR><BR>-----Original Message-----<BR>>From Karl Oberholser <oberhols@messiah.edu><BR>Sent Fri 1/30/2009 9:23 PM<BR>To Forum for the Proteopedia User Community<BR><proteopedialist-for-users@bioinformatics.org><BR>Subject Re: [Proteopedia] Scr
ipt compiler error<BR><BR>Eran and Jaim,<BR>If jvxl could be made to be an acceptable file type for uploading, I think<BR>that I will be able to display a surface in PP by drawing it using a jvxl<BR>data file, and thereby avoid the long computation time. At least I would<BR>like to try doing it.<BR><BR>Karl<BR><BR>>>> "Angel Herraez" <angel.herraez@uah.es> 1/30/2009 10:05 AM >>><BR>I've managed to reach the source of the script files saved for <BR>scenes. Those contain the isosurface command, as expected.<BR>So the solution would be to implement in the SAT a way to substitute <BR>the isosurface generation code for an isosurface loading code, plus <BR>to save the isosurface to a file on the server. <BR>Not trivial at all!<BR><BR><BR><BR>_______________________________________________<BR>Proteopedialist-for-users mailing list<BR>Proteopedialist-for-users@bioinformatics.org <BR><A href="http://www.bioinformatics.org/mailman/listinfo/proteopedialist
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